Command line: [exonerate -m p2g --showtargetgff --exhaustive yes -q proteina.fa -t TR2_caballus.2.subseq.fa]
Hostname: [ws101175]

C4 Alignment:
------------
         Query: TR2_caballus
        Target: KI538526.1:subseq(5898784,200254) Balaenoptera acutorostrata scammoni unplaced genomic scaffold scaffold87, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 2154
   Query range: 3 -> 496
  Target range: 52642 -> 101225

      4 : GlyCysSerProGlyGlySerArg  >>>> Target Intron 1 >>>>  GlyPr :     13
          ||||||  !|||||||||..!|||           15483 bp          |||  
          GlyCysValProGlyGlyGluArg++                         ++GlyVa
  52643 : GGCTGCGTCCCGGGTGGGGAGCGGgt.........................agGGAGT :  68153

     14 : oSer{G}  >>>> Target Intron 2 >>>>  {ly}ArgGlnGlyTyrAspLeu :     21
          !|||{|}           2067 bp           {||}|||||| !!|||||||||
          lSer{G}-+                         ++{ly}ArgGlnCysTyrAspLeu
  68154 : GAGT{G}ct.........................ag{GG}CGGCAATGCTATGACCTC :  70244

     22 : LeuValIleGlyGlyGlySerGlyGlyLeuAlaCysAlaLysGlu{A}  >>>> Tar :     37
          |||||||||||||||||||||||||||||||||||||||||||||{|}          
          LeuValIleGlyGlyGlySerGlyGlyLeuAlaCysAlaLysGlu{A}++        
  70245 : CTGGTGATTGGCGGGGGATCCGGCGGCCTAGCCTGTGCCAAGGAA{G}gt........ :  70295

     38 : get Intron 3 >>>>  {la}AlaGlnLeuGlyLysLysValAlaValValAspTy :     49
           4523 bp           {||}|||||||||||||||||||||||||||||||||||
                           ++{la}AlaGlnLeuGlyLysLysValAlaValValAspTy
  70296 : .................ag{CC}GCTCAGCTGGGGAAGAAGGTGGCCGTGGTGGACTA :  74851

     50 : rValGluProSerProArg{G}  >>>> Target Intron 4 >>>>  {ly}Thr :     57
          |||||||||||||||||||{|}            315 bp           {||}|||
          rValGluProSerProArg{G}++                         ++{ly}Thr
  74852 : CGTGGAGCCTTCCCCCCGA{G}gt.........................ag{gt}ACC :  75190

     58 : ArgTrpGlyLeuGlyGlyThrCysValAsnValGlyCysIleProLysLysLeuMetH :     77
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ArgTrpGlyLeuGlyGlyThrCysValAsnValGlyCysIleProLysLysLeuMetH
  75191 : CGGTGGGGCCTTGGTGGCACCTGCGTGAACGTCGGCTGCATCCCCAAGAAGCTGATGC :  75250

     78 : isGlnAlaAlaLeuLeuGlyGlyMetIleArgAspAlaProHisTyrGlyTrpGluVa :     96
          |||||||||||||||||||||||||||||!.!|||||||||||||||||||||:!!||
          isGlnAlaAlaLeuLeuGlyGlyMetIleHisAspAlaProHisTyrGlyTrpLysVa
  75251 : ACCAGGCGGCGCTGCTAGGGGGCATGATCCACGACGCCCCCCACTACGGCTGGAAGGT :  75307

     97 : lProProLeuValProHisAsp{Tr}  >>>> Target Intron 5 >>>>  {p} :    104
          | !!! !! !:!!   ||||||{||}            456 bp           {|}
          lAlaGlnProLeu---HisAsp{Tr}++                         ++{p}
  75308 : GGCCCAGCCCCTG---CACGAC{TG}gt.........................ag{G} :  75786

    105 : ArgLysMetAlaGluAlaValGlnAsnHisValLysSerLeuAsnTrpGlyHisArgV :    124
           !!|||||||||||||||:!!|||||||||||||||||||||||||||||||||||||
          GlyLysMetAlaGluAlaIleGlnAsnHisValLysSerLeuAsnTrpGlyHisArgV
  75787 : GGGAAAATGGCAGAAGCCATTCAGAACCACGTGAAGTCCCTGAACTGGGGGCACCGGG :  75844

    125 : alGlnLeuGlnAsp{Ar}  >>>> Target Intron 6 >>>>  {g}LysValLy :    132
          ||||||||||||||{||}            544 bp           {|}||||||||
          alGlnLeuGlnAsp{Ar}++                         ++{g}LysValLy
  75845 : TCCAGCTGCAGGAC{AG}gt.........................ag{a}aaAGTGAA :  76412

    133 : sTyrPheAsnIleLysAlaSerPheValAsnGluHisMetValCysGlyValThrLys :    151
          ||||||||||.!!||||||||||||||||||  !||||||||||||||||||:!!|||
          sTyrPheAsnPheLysAlaSerPheValAsnProHisMetValCysGlyValSerLys
  76413 : GTACTTTAACTTCAAGGCCAGCTTTGTCAACCCACACATGGTTTGTGGTGTCTCAAAA :  76469

    152 : AspGlyLysGlu  >>>> Target Intron 7 >>>>  ThrLeuLeuSerAlaGl :    161
          ! !|||:!!|||            442 bp           |||||||||||||||!!
          GlyGlyGluGlu++                         ++ThrLeuLeuSerAlaAs
  76470 : GGTGGGGAAGAGgt.........................agACTCTGCTTTCGGCCGA :  76941

    162 : uHisIleValIleAlaThrGlyGlyArgProArgTyrProThrHis  >>>> Targe :    177
          :|||||||||||||||||||||||||||||||||||||||||||||           2
          pHisIleValIleAlaThrGlyGlyArgProArgTyrProThrHis++          
  76942 : CCACATTGTCATCGCCACCGGAGGGCGGCCGAGGTACCCCACGCACgt.......... :  76991

    178 : t Intron 8 >>>>  IleGluGlyAlaLeuGluTyrGlyIleThrSerAspAspIl :    190
          421 bp           |||||||||||||||||||||||||||||||||||||||:!
                         ++IleGluGlyAlaLeuGluTyrGlyIleThrSerAspAspLe
  76992 : ...............agATCGAAGGTGCCTTGGAATACGGGATTACGAGTGATGACCT :  79449

    191 : ePheTrpLeuLysGluSerProGlyLys{Th}  >>>> Target Intron 9 >>> :    200
          !|||||||||||||||||||||||||||{||}           6023 bp        
          uPheTrpLeuLysGluSerProGlyLys{Th}++                        
  79450 : CTTCTGGCTGAAGGAGTCCCCTGGAAAA{AC}gt........................ :  79483

    201 : >  {r}ValAlaLeuGluCysAlaGlyPheLeuThrGlyLeuGlyLeuAspAlaThrV :    218
             {|}||||||||||||||||||||||||||||||||||||||||||||||||||||
           --{r}ValAlaLeuGluCysAlaGlyPheLeuThrGlyLeuGlyLeuAspAlaThrV
  79484 : .ga{C}GTGGCCCTGGAGTGCGCTGGCTTCCTCACTGGGCTCGGCCTGGATGCCACTG :  85556

    219 : alMetValArgSerIleProLeuArgGlyPheAspGln  >>>> Target Intron :    231
          |||||:!!||||||:!!|||||||||!.!|||||||||            2043 bp 
          alMetIleArgSerValProLeuArgAlaPheAspGln++                  
  85557 : TCATGATACGCAGTGTCCCTCTACGGGCCTTCGACCAGgt.................. :  85597

    232 :  10 >>>>  GlnMetSerSerLeuValThrGluTyrMetAlaSerHisGlyThrArg :    246
                    ||||||:!!! !||||||||||||:!!|||!.!  !||||||||||||
                  ++GlnMetAlaPheLeuValThrGluHisMetValValHisGlyThrArg
  85598 : ........agCAAATGGCTTTCTTGGTCACAGAGCACATGGTGGTTCACGGCACCCGA :  87683

    247 : PheLeuArgGlyCysThrProSerArgValGlyArgLeuProAspGlyGlnLeuGlnV :    266
          .!!||||||||||||||||||! !||||||! !|||||| !!||| !!!:!|||||||
          IleLeuArgGlyCysThrProLeuArgValGluArgLeuSerAspArgArgLeuGlnV
  87684 : ATCCTGAGGGGCTGCACCCCCTTGAGGGTGGAGAGGCTCTCAGACAGGCGGCTCCAGG :  87743

    267 : alThrTrpGluAspLeuAlaSerGlyLysLysAspValGlyThrPheAspThrValLe :    285
          ||||||||! !||||||||||||! !|||||||||..!||||||||||||||||||||
          alThrTrpValAspLeuAlaSerAspLysLysAspThrGlyThrPheAspThrValLe
  87744 : TCACCTGGGTGGACCTCGCCTCCGACAAGAAGGACACAGGCACCTTTGACACCGTCCT :  87800

    286 : uTrpAlaIle{G}  >>>> Target Intron 11 >>>>  {ly}ArgValProGl :    293
          |||||||:!!{|}            7934 bp           {||}|||||||||||
          uTrpAlaVal{G}++                          ++{ly}ArgValProGl
  87801 : GTGGGCTGTA{G}gt..........................ag{GC}CGAGTTCCAGA :  95758

    294 : uThrArgSerLeuHisLeuGluAsnAlaGlyValAsnThrHisProAsnSerGlnLys :    312
          |||||||.!!|||:!!||||||!!.|||||||||..!|||:!!||||||!!!||||||
          uThrArgGlyLeuAsnLeuGluLysAlaGlyValArgThrAsnProAsnThrGlnLys
  95759 : AACCAGAGGTCTGAATTTGGAGAAGGCTGGTGTGCGTACCAACCCCAACACTCAGAAG :  95815

    313 : IleLeuValAspAlaGlyGluAlaThrSerValProHisIleTyrAlaIleGlyAspV :    332
          |||||||||||||||  !||||||||||||||||||||||||||||||||||||||||
          IleLeuValAspAlaGlnGluAlaThrSerValProHisIleTyrAlaIleGlyAspV
  95816 : ATCCTGGTTGACGCCCAGGAAGCCACCTCCGTCCCCCACATCTATGCCATCGGAGATG :  95875

    333 : alAlaGlu  >>>> Target Intron 12 >>>>  GlyArgProGluLeuThrPr :    341
          ||||||||            2304 bp           ||||||||||||||||||||
          alAlaGlu++                          ++GlyArgProGluLeuThrPr
  95876 : TGGCGGAGgt..........................agGGGCGGCCAGAGCTGACGCC :  98206

    342 : oProAlaValMetAlaGlyLysLeuLeuAlaArgArgLeuCysGlyGlnSerSerAsp :    360
          | !!|||:!!|||||||||!:!|||||||||!:!|||||||||.!!!:!|||||||||
          oThrAlaIleMetAlaGlyArgLeuLeuAlaGlnArgLeuCysSerArgSerSerAsp
  98207 : CACGGCTATCATGGCCGGGAGGCTCTTAGCCCAGCGGCTCTGCAGTCGGTCCTCAGAC :  98263

    361 : LeuMetAspTyrAspAsn  >>>> Target Intron 13 >>>>  ValProThrT :    370
          ||||||||||||||||||            238 bp            ||||||||||
          LeuMetAspTyrAspAsn++                          ++ValProThrT
  98264 : CTGATGGACTATGACAACgt..........................agGTCCCCACGA :  98531

    371 : hrValPheThrProLeuGluTyrGlyCysValGlyLeuSerGluGluLysAlaValAl :    389
          |||||||||||||||||||||||||||||||||||||||||||||||:!!||||||||
          hrValPheThrProLeuGluTyrGlyCysValGlyLeuSerGluGluGluAlaValAl
  98532 : CGGTCTTCACACCGCTGGAGTATGGCTGTGTGGGGCTCTCAGAGGAGGAGGCTGTGGC :  98588

    390 : aArgHisGlyGluGluHisValGlu  >>>> Target Intron 14 >>>>  Val :    398
          ||||||||||||||||!.!||||||            1388 bp           |||
          aArgHisGlyGluGluArgValGlu++                          ++Val
  98589 : TCGCCATGGAGAGGAGCGTGTGGAGgt..........................agGTT : 100003

    399 : TyrHisAlaTyrTyrLysProLeuGluPheThrValAlaGluArgAspAlaSerGlnC :    418
          ||||||||||||||||||||||||||||||..!:!! !!|||||||||||||||||||
          TyrHisAlaTyrTyrLysProLeuGluPheValIleProGluArgAspAlaSerGlnC
 100004 : TATCACGCGTATTATAAACCACTGGAGTTCGTGATTCCTGAACGGGACGCGTCCCAGT : 100063

    419 : ysTyrIleLys  >>>> Target Intron 15 >>>>  MetValCysLeuArgGl :    427
          |||||||||||             81 bp            |||||||||||||||||
          ysTyrIleLys++                          ++MetValCysLeuArgGl
 100064 : GTTACATAAAGgt..........................agATGGTGTGTCTGCGGGA : 100171

    428 : uProProGlnLeuValLeuGlyLeuHisPheLeuGlyProAsnAlaGlyGluValThr :    446
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          uProProGlnLeuValLeuGlyLeuHisPheLeuGlyProAsnAlaGlyGluValThr
 100172 : GCCCCCACAGCTGGTGCTGGGCCTGCACTTCCTTGGCCCCAATGCTGGCGAAGTTACT : 100228

    447 : GlnGlyPheAlaLeuGlyIle{Ly}  >>>> Target Intron 16 >>>>  {s} :    454
          |||||||||||||||||||||{||}            845 bp            {|}
          GlnGlyPheAlaLeuGlyIle{Ly}++                          ++{s}
 100229 : CAAGGATTTGCTCTGGGGATC{AA}gt..........................ag{G} : 101099

    455 : CysGlyAlaSerTyrAlaGlnValMetArgThrLeuGlyIleHisProThrCysAlaG :    474
          |||||||||||||||! !|||||||||||||||:!!||||||||||||||||||||||
          CysGlyAlaSerTyrGluGlnValMetArgThrValGlyIleHisProThrCysAlaG
 101100 : TGTGGGGCCTCCTACGAGCAGGTGATGCGGACGGTGGGCATCCACCCAACTTGTGCCG : 101157

    475 : luGluValAlaLysLeuArgIleThrLysArgSerGlyLeuAspProThrValThrGl :    493
          |||||||||||||||||||||||:!!||||||||||||||||||||||||||||||||
          luGluValAlaLysLeuArgIleSerLysArgSerGlyLeuAspProThrValThrGl
 101158 : AGGAGGTGGCCAAGCTGCGCATCTCCAAGCGCTCAGGCCTGGACCCCACCGTGACTGG : 101214

    494 : yCysUnkGly :    496
          ||||   |||
          yCys***Gly
 101215 : CTGCTGAGGC : 101225

vulgar: TR2_caballus 3 496 . KI538526.1:subseq(5898784,200254) 52642 101225 + 2154 M 8 24 5 0 2 I 0 15479 3 0 2 M 3 9 S 0 1 5 0 2 I 0 2063 3 0 2 S 1 2 M 21 63 S 0 1 5 0 2 I 0 4519 3 0 2 S 1 2 M 18 54 S 0 1 5 0 2 I 0 311 3 0 2 S 1 2 M 44 132 G 1 0 M 2 6 S 0 2 5 0 2 I 0 452 3 0 2 S 1 1 M 24 72 S 0 2 5 0 2 I 0 540 3 0 2 S 1 1 M 26 78 5 0 2 I 0 438 3 0 2 M 21 63 5 0 2 I 0 2417 3 0 2 M 23 69 S 0 2 5 0 2 I 0 6019 3 0 2 S 1 1 M 30 90 5 0 2 I 0 2039 3 0 2 M 58 174 S 0 1 5 0 2 I 0 7930 3 0 2 S 1 2 M 45 135 5 0 2 I 0 2300 3 0 2 M 32 96 5 0 2 I 0 234 3 0 2 M 31 93 5 0 2 I 0 1384 3 0 2 M 24 72 5 0 2 I 0 77 3 0 2 M 32 96 S 0 2 5 0 2 I 0 841 3 0 2 S 1 1 M 42 126
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2014-11-26
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	gene	52643	101225	2154	+	.	gene_id 1 ; sequence TR2_caballus ; gene_orientation +
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	cds	52643	52666	.	+	.	
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	exon	52643	52666	.	+	.	insertions 0 ; deletions 0
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	splice5	52667	52668	.	+	.	intron_id 1 ; splice_site "GT"
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	intron	52667	68149	.	+	.	intron_id 1
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	splice3	68148	68149	.	+	.	intron_id 0 ; splice_site "AG"
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	cds	68150	68159	.	+	.	
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	exon	68150	68159	.	+	.	insertions 0 ; deletions 0
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	splice5	68160	68161	.	+	.	intron_id 2 ; splice_site "CT"
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	intron	68160	70226	.	+	.	intron_id 2
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	splice3	70225	70226	.	+	.	intron_id 1 ; splice_site "ag"
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	cds	70227	70292	.	+	.	
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	exon	70227	70292	.	+	.	insertions 0 ; deletions 0
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	splice5	70293	70294	.	+	.	intron_id 3 ; splice_site "GT"
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	intron	70293	74815	.	+	.	intron_id 3
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	splice3	74814	74815	.	+	.	intron_id 2 ; splice_site "AG"
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	cds	74816	74872	.	+	.	
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	exon	74816	74872	.	+	.	insertions 0 ; deletions 0
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	splice5	74873	74874	.	+	.	intron_id 4 ; splice_site "GT"
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	intron	74873	75187	.	+	.	intron_id 4
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	splice3	75186	75187	.	+	.	intron_id 3 ; splice_site "ag"
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	cds	75188	75329	.	+	.	
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	exon	75188	75329	.	+	.	insertions 0 ; deletions 1
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	splice5	75330	75331	.	+	.	intron_id 5 ; splice_site "GT"
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	intron	75330	75785	.	+	.	intron_id 5
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	splice3	75784	75785	.	+	.	intron_id 4 ; splice_site "AG"
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	cds	75786	75860	.	+	.	
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	exon	75786	75860	.	+	.	insertions 0 ; deletions 0
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	splice5	75861	75862	.	+	.	intron_id 6 ; splice_site "GT"
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	intron	75861	76404	.	+	.	intron_id 6
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	splice3	76403	76404	.	+	.	intron_id 5 ; splice_site "ag"
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	cds	76405	76483	.	+	.	
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	exon	76405	76483	.	+	.	insertions 0 ; deletions 0
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	splice5	76484	76485	.	+	.	intron_id 7 ; splice_site "GT"
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	intron	76484	76925	.	+	.	intron_id 7
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	splice3	76924	76925	.	+	.	intron_id 6 ; splice_site "AG"
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	cds	76926	76988	.	+	.	
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	exon	76926	76988	.	+	.	insertions 0 ; deletions 0
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	splice5	76989	76990	.	+	.	intron_id 8 ; splice_site "GT"
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	intron	76989	79409	.	+	.	intron_id 8
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	splice3	79408	79409	.	+	.	intron_id 7 ; splice_site "AG"
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	cds	79410	79480	.	+	.	
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	exon	79410	79480	.	+	.	insertions 0 ; deletions 0
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	splice5	79481	79482	.	+	.	intron_id 9 ; splice_site "GT"
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	intron	79481	85503	.	+	.	intron_id 9
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	splice3	85502	85503	.	+	.	intron_id 8 ; splice_site "GA"
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	cds	85504	85594	.	+	.	
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	exon	85504	85594	.	+	.	insertions 0 ; deletions 0
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	splice5	85595	85596	.	+	.	intron_id 10 ; splice_site "GT"
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	intron	85595	87637	.	+	.	intron_id 10
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	splice3	87636	87637	.	+	.	intron_id 9 ; splice_site "AG"
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	cds	87638	87812	.	+	.	
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	exon	87638	87812	.	+	.	insertions 0 ; deletions 0
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	splice5	87813	87814	.	+	.	intron_id 11 ; splice_site "GT"
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	intron	87813	95746	.	+	.	intron_id 11
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	splice3	95745	95746	.	+	.	intron_id 10 ; splice_site "AG"
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	cds	95747	95883	.	+	.	
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	exon	95747	95883	.	+	.	insertions 0 ; deletions 0
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	splice5	95884	95885	.	+	.	intron_id 12 ; splice_site "GT"
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	intron	95884	98187	.	+	.	intron_id 12
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	splice3	98186	98187	.	+	.	intron_id 11 ; splice_site "AG"
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	cds	98188	98283	.	+	.	
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	exon	98188	98283	.	+	.	insertions 0 ; deletions 0
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	splice5	98284	98285	.	+	.	intron_id 13 ; splice_site "GT"
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	intron	98284	98521	.	+	.	intron_id 13
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	splice3	98520	98521	.	+	.	intron_id 12 ; splice_site "AG"
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	cds	98522	98614	.	+	.	
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	exon	98522	98614	.	+	.	insertions 0 ; deletions 0
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	splice5	98615	98616	.	+	.	intron_id 14 ; splice_site "GT"
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	intron	98615	100002	.	+	.	intron_id 14
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	splice3	100001	100002	.	+	.	intron_id 13 ; splice_site "AG"
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	cds	100003	100074	.	+	.	
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	exon	100003	100074	.	+	.	insertions 0 ; deletions 0
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	splice5	100075	100076	.	+	.	intron_id 15 ; splice_site "GT"
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	intron	100075	100155	.	+	.	intron_id 15
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	splice3	100154	100155	.	+	.	intron_id 14 ; splice_site "AG"
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	cds	100156	100253	.	+	.	
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	exon	100156	100253	.	+	.	insertions 0 ; deletions 0
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	splice5	100254	100255	.	+	.	intron_id 16 ; splice_site "GT"
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	intron	100254	101098	.	+	.	intron_id 16
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	splice3	101097	101098	.	+	.	intron_id 15 ; splice_site "AG"
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	cds	101099	101225	.	+	.	
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	exon	101099	101225	.	+	.	insertions 0 ; deletions 0
KI538526.1:subseq(5898784,200254)	exonerate:protein2genome:local	similarity	52643	101225	2154	+	.	alignment_id 1 ; Query TR2_caballus ; Align 52643 4 24 ; Align 68150 12 9 ; Align 70229 16 63 ; Align 74818 38 54 ; Align 75190 57 132 ; Align 75322 102 6 ; Align 75787 105 72 ; Align 76406 130 78 ; Align 76926 156 63 ; Align 79410 177 69 ; Align 85505 201 90 ; Align 87638 231 174 ; Align 95749 290 135 ; Align 98188 335 96 ; Align 98522 367 93 ; Align 100003 398 72 ; Align 100156 422 96 ; Align 101100 455 126
# --- END OF GFF DUMP ---
#

